Pharma & Biotech ERP: GxP compliance, batch traceability and serialization

A pharmaceutical ERP must meet requirements that few industries face: good manufacturing practices, batch and serial number traceability, computerized system validation and data integrity. With Microsoft Dynamics 365 Finance & Operations, FiveForty helps laboratories, pharmaceutical manufacturers, biotechs and contract manufacturers secure their operations.

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What is a pharmaceutical ERP?

A pharmaceutical ERP is an integrated management software package able to manage production, quality, inventory, purchasing and finance for a company subject to a strict regulatory framework. What sets it apart is not functional but evidential: every operation must be recorded, time-stamped, attributable to an identified user and reconstructable years later.

ERP, LIMS and MES: who does what?

The LIMS manages the laboratory: samples, analyses, results. The MES runs the shop floor: real-time production orders, machine parameters, electronic batch record. TheERP orchestrates the company: planning, procurement, inventory, costs and accounting. The three are complementary and must communicate: an analysis result must be able to release a lot in the ERP without re-entry.

Why a generic ERP is not enough

A standard ERP knows how to manage inventory. It cannot natively block a batch in quarantine until quality control has ruled on it, trace a serial number all the way to the patient, or produce an audit trail that meets an inspector’s expectations. These capabilities depend on the configuration and industry expertise of the integrator far more than on the choice of software vendor.

ERP for the pharmaceutical industry

Drug manufacturing requires a level of document control that no other industrial sector demands.

Batch records and good manufacturing practices

The GMP (good manufacturing practices, or GMP internationally) require that every lot produced be documented end to end: raw materials used, equipment, parameters, operators and checks performed. The ERP must build this record automatically, not reconstruct it after the fact.

Batch management, quarantine and release

A manufactured batch is not a sellable batch. It remains in quarantine status until the release decision, which is made based on test results. The ERP must manage these statuses, physically and logically block unreleased inventory, and keep a record of who released what and on what basis.

Quality control and non-conformities

Inspection plans, sampling, deviations, CAPA (corrective and preventive actions), change control. These quality processes must live in the same system as production; otherwise discrepancies are resolved by email and disappear from the records.

Cold chain and controlled storage

Temperatures, dedicated storage zones, products under special status: location management must reflect actual physical constraints. An untracked break in the cold chain becomes both a product risk and a regulatory risk.

Batch recall and pharmacovigilance

In the event of a recall, the question is simple: where did this lot go, and how quickly can you locate it? A properly configured ERP reconstructs the complete genealogy (incoming materials, lots produced, customers shipped to) in a matter of minutes.

Contract manufacturers, CDMOs and subcontracting

Many companies entrust all or part of their production to contract manufacturers. The ERP must manage subcontracting: supplying materials, tracking work in progress at the third party, receiving and inspecting the finished product, with the same traceability as in-house.

“ In pharma, what is not recorded did not happen.”

Biotech ERP: very distinct needs

A biotech is not a small pharma company. Its model, its pace and its funding constraints change everything.

From research to production: scaling up

A biotech moves from the lab to pilot scale and then to industrialization, sometimes within a few months. The ERP must support this scale-up without having to rebuild everything at each stage: the structure of bills of materials and routings must evolve, not be redone.

Clinical trials and clinical batch management

Batches intended for trials follow their own rules: randomization, blinded labeling, traceability by investigator site, product accountability. These flows are unlike any standard commercial flow.

Tracking of R&D costs and funding

Grants, research tax credit, fundraising, partnerships: a biotech must justify how its spending is allocated by program and by funding source. Project-based cost accounting becomes a survival tool, not a convenience.

Rapid growth and headcount doubling

Growing from twenty to two hundred people in two years puts every process to the test. A structuring ERP enforces approval workflows from the start and avoids the organizational debt that has to be paid later at audit time.

Intellectual property and confidentiality

Formulas, processes, results: the company’s most sensitive data passes through the system. Fine-grained rights management, project-level segregation and access logging are not optional.

Partnerships and the CDMO model

Many biotechs do not manufacture themselves and work with CDMOs. The ERP must manage this relationship: process transfer, tracking of batches produced by the partner, quality control on receipt.

Regulatory compliance and validation

In a regulated environment, the ERP itself is subject to compliance, not just a tool.

GxP: GMP, GLP and GCP

Master data GxP cover manufacturing (GMP), laboratories (GLP) and clinical trials (GCP). They require written procedures, complete records and proof that the system does what it is supposed to do.

FDA 21 CFR Part 11 and European Annex 11

These texts govern electronic records and signatures: unique user identification, attributable signatures, an unalterable audit trail, version management. The 21 CFR Part 11 applies as soon as you export to the United States; the Annex 11 of the EU GMP covers computerized systems in Europe.

Computerized system validation (CSV)

An ERP in a GxP environment must be qualified: installation, operational and performance qualification (IQ, OQ, PQ), with validation documentation maintained at every version upgrade. It is a workstream in its own right, to be planned from the scoping phase.

Data integrity and the ALCOA+ principle

Data must be attributable, legible, contemporaneous, original and accurate, as defined by ALCOA+. In practice: no change without a trace, no deletion, no unjustified retroactive entry.

Preparing for inspections

ANSM, EMA, FDA: an inspection largely consists of requesting evidence. A system that produces this evidence in a few clicks turns an ordeal into a formality and greatly reduces the internal cost of compliance.

Our conviction

Compliance should not slow down science

Too many teams spend more time documenting than producing. At FiveForty, we configure systems where traceability comes from the business task itself, so your teams get time back for what really matters.

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End-to-end serialization and traceability

The fight against falsified medicines has made unique identification of each pack mandatory. It is now one of the most structural workstreams in the industry.

Serialization and the Falsified Medicines Directive

Each pack carries a unique identifier, registered in a European repository and verified at dispensing. The ERP must generate, assign and transmit these numbers, then handle special cases: reprinting, destruction, returns.

Upstream and downstream traceability

Tracing back from a finished product to its raw materials, and forward from a raw material to every lot that contains it: this two-way genealogy is the first thing an inspector asks for.

Unique device identification (UDI) for medical devices

Medical device manufacturers fall under the European MDR regulation and the obligation ofUDI. The logic is similar to pharmaceutical serialization and relies on the same foundations in the ERP.

Integration with LIMS and MES

Test results must automatically trigger the release or blocking of a batch in the ERP; shop floor data must feed the batch record. Without these interfaces, traceability remains manual, and therefore fragile.

Serialization for export

Each market has its own rules: the European approach, American requirements, Asian frameworks. An exporting company must be able to manage several serialization schemes in a single system.

360° Solutions & 180° Vision

Assigning roles properly

The first mistake in a project in a regulated environment is asking one tool to do what another does better.

ERP, LIMS or MES: the comparison

Criterion LIMS MES ERP
Domain The laboratory The workshop The company
Manages Samples and analyses Production orders Inventory, purchasing, finance
Time By test Real time Planning
Traceability Results Batch record Complete genealogy
Lot release Provides the result Records execution Changes the inventory status

All three must be interfaced: the quality of the exchanges, more than the choice of each component, determines how robust traceability is.

Why Dynamics 365 for pharma and biotech

FiveForty is a Microsoft Dynamics 365 Finance & Operations integrator and partner.

Native batch and serial number management

Lot and serial tracking dimensions, expiration dates, inventory statuses, upstream and downstream genealogy: these mechanisms are standard and require no custom development.

Integrated quality and inspection

Quality control plans, quality orders, automatic blocking of nonconforming inventory and nonconformance management are part of the Supply Chain Management core.

Audit trail and security

Change logging, granular role management and segregation of duties provide the foundations expected by GxP frameworks, to be documented afterwards in your validation file.

Multi-site, multi-country and consolidation

Multiple legal entities, multiple currencies, multiple regulatory frameworks in a single instance: an asset for growing groups or those expanding internationally.

Management with Power BI

Yield indicators, non-conformance rates, release lead times, costs per lot: dashboards fed directly by the ERP, with no intermediate export.

Our support, from scoping to application maintenance

Regulatory scoping, configuration, data migration, validation support, training, then application maintenance to absorb version upgrades without breaking compliance.

They trust us in pharma and biotech

Case studies

Explore our case studies

ERYTECH turned to FiveForty to rapidly deploy and secure its Dynamics 365 ERP in a demanding environment. A responsive and structured engagement that ensured financial continuity, compliance, and an accelerated go live.

GC Aesthetics relies on FiveForty to secure and strengthen its Dynamics 365 Finance ERP in a demanding international environment. Expert support designed to ensure compliance, traceability, and long term control of financial processes.

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The benefits of an ERP for pharma and biotech

  • Full traceability of batches, serial numbers and operations, both upstream and downstream
  • Lot recall reconstructed in minutes rather than days
  • Serialization managed natively, including for export
  • Tool-supported GxP compliance : audit trail, signatures, data integrity
  • Inspections prepared : evidence is produced in a few clicks
  • Built-in quality : quarantine, release and CAPA in the same system
  • Controlled costs by lot, by project and by funding source
  • Growth absorbed : from pilot to industrialization without starting over
  • Managed subcontracting with the same rigor as in-house

A question? An answer.

Frequently asked questions